DreEX6036395 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25239975-25240830:-
Coord C1 exon
chr9:25240711-25240830
Coord A exon
chr9:25240306-25240489
Coord C2 exon
chr9:25239975-25240154
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGTTCAAAAAAGTTG
3' ss Score
4.74
5' ss Seq
CCTGTATGA
5' ss Score
0.57
Exon sequences
Seq C1 exon
GAAGTTGCGCCTTATTGATGTAGAGGCCTTCCACAGTGAGGAGGAGTCTATGGAGTTATCTGTCTTTCAGCAGTTAGTCAACAAACACATTGAACGTGCCACAGGCATCCTTCTCAACAC
Seq A exon
TTGGATACCAGAAGTGCAGAAAATCTATCATCGTGGTAACAAGCGCAATCTGATCCCCAGCAACAGTAGTGTTGCACGACTGCAGTCTTTCTACAATTGTGTGGCCACACTCATGACCTCACAGCTCCAAAGCCTGGCACTTGAGTCTATGCAGGACTACACACACCTCATCGCCCAGAACCCT
Seq C2 exon
CATTCAGTGCGTGTCTATGAGCATCCAGGGTTTGTCCTAAGACTGGTTCTGGACCAAAACACTATCAAATTTGAACCTGATTTCAAAGACTTTGAAGTAACTGTGCTAAATGTGTATAATGCGATGCTGAAATCCTTAAGTGTGATCCCTCGAGTGGAGACAAAGCTGTACTCAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCACAGTGAGGAGGAGT
R:
CTCCACTCGAGGGATCACACT
Band lengths:
253-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]