GgaEX1020203 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9265595-9269977:-
Coord C1 exon
chr7:9269858-9269977
Coord A exon
chr7:9267328-9267511
Coord C2 exon
chr7:9265595-9265774
Length
184 bp
Sequences
Splice sites
3' ss Seq
AAATATTGTATGCTCTTTAGGTG
3' ss Score
6.64
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AAATTTACGCCTTCTTGACACAGATCTGTTTCACAATAAACAGGAAGCTGAGGAACTTGCATCTTTCCAGATTAAAGTCATCCAGGAAATTGGAAAATCCAAAGCTGTTCTATCTAGGAA
Seq A exon
GTGGCTTCCAGAAGTGCAGAAAATCTTTTACCAAAGTAATAAAAAAAAGCAAATACCCAGTTATACCAGCACTGCTAAATTAGAGGCTTTCTTCAGATGTGCTGCCACTTTAATGACCCGTCAACTGCAACAATTACTTTTACAATCAATTCAGGACTTCACAGATTTAATTGTTCAACCAGCA
Seq C2 exon
AAGTCAGTTCGAGCCTACGAACACCCAGGTTTCATCCTGAGGGCAACACTTGTGAACGACTGTATTAAATTTGAACCTGACTTTAATGACTATGAGGATGTATTACTGAATGTCTATGCTGTTATGATTAATGCTGTCAGTGATATACCAAGAGTTGAGACCAAATTATTTTCTAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'10-12,'10-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGCTGAGGAACTTGC
R:
TGGTCTCAACTCTTGGTATATCACTG
Band lengths:
244-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]