MmuEX6024124 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46176105-46181367:+
Coord C1 exon
chr1:46176105-46176224
Coord A exon
chr1:46180462-46180645
Coord C2 exon
chr1:46181188-46181367
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTGTTCTTTCAAGGTG
3' ss Score
10.79
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GAAATTACGTCTAGTTGACATAGAAGAATTTCACAACCGCCAGGATTCATTAGAGCTGTCAGAATTTCAGAACATTGTCATTAAACACATGGAATCTGCCAAGGAGATGCTACTTAAAAC
Seq A exon
GTGGTTTCCAGAAGTGCAGAATATTTATTACAAAGGCAATAAAAAAAAGCAATTGCCAACTGGCAAGAGCAGTGCCAAATTGGACTCTTTTTTCAACTGCGCTGCTACACTCATGACCTTACAGCTGCAGGACCTCATTCTTGTCTCCATGCAAGACTTCACAGACCTCATCGCCCAACCTCCG
Seq C2 exon
GAATCAACTAGAGCTTTTGAACATCCAGGTTTCATTATGAGGTTGATTCTTGATAAAAAGACCATTAAGTTTGCACCTGACTTTAATGACTACATTGATATCCTTATCAATGTCTATGAAATCATGATTAAGATGGTCAGCTTTGTACCAAGAGTTGAGACAAAATTGTATTCCCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACAACCGCCAGGATTCA
R:
TGGTACAAAGCTGACCATCTT
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: