BtaEX6010430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84917723-84926076:-
Coord C1 exon
chr2:84925967-84926076
Coord A exon
chr2:84920930-84921098
Coord C2 exon
chr2:84917723-84917825
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTCTTATATTTCAGAAC
3' ss Score
9.23
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GAAAATAATTTAGAAACAAAGATGATCAATGCTGGCTTACGATATGGATATGAATATCTGGGCAATTCCCCTAGGCTGGTTATTACTCCACTCACTGACAGATGTTACAG
Seq A exon
AACCTTATTTGGAGCCCTTCATCTGCACCTTGGAGGAGCACCTGAGGGGCCAGCTGGCACTGGAAAGACTGAAACTACTAAAGATTTAGCCAAAGCTGTAGCCAAGCAGTGTGTTGTTTTCAACTGCTCTGATGGGTTGGACTATCTGGCTCTAGGAAAATTCTTTAAG
Seq C2 exon
GGACTGTTATCTTGTGGTGCCTGGGCTTGCTTCGATGAGTTTAACAGAATTGATTTGGAAGTGCTGTCTGTGGTTGCTCAACAAATTCTTACTATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=59.5)
A:
PF127742=AAA_6=FE(24.2=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAAACAAAGATGATCAATGCTGG
R:
CTTTGGATAGTAAGAATTTGTTGAGC
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]