GgaEX1020207 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10728747-10730809:-
Coord C1 exon
chr7:10730700-10730809
Coord A exon
chr7:10730182-10730350
Coord C2 exon
chr7:10728747-10728849
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTCTACTATTTTCTTTTCAGGAC
3' ss Score
11.15
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GAAGGACATCTTCAAACAAGAATGATCAATGCTGGACTGAGATATGGATATGAATATCTTGGCAATACACCTAGGCTGGTTATTACTCCACTTACAGACAGATGCTACAG
Seq A exon
GACACTATTTGGTGCACTACATCTGCATCTTGGAGGTGCCCCTGAAGGTCCTGCAGGAACTGGAAAAACAGAAACAACAAAAGATTTAGCAAAGGCTGTAGCTAAGCAGTGTGTGGTTTTCAATTGTTCTGATGGATTGGATTACATCGCATTAGGAAAATTCTTTAAG
Seq C2 exon
GGTTTGCTATCTTGTGGAGCGTGGGCTTGCTTTGATGAATTCAACAGGATTGATTTGGAAGTGCTTTCTGTGGTTGCTCAGCAGATTTTTACTATCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=59.5)
A:
PF127742=AAA_6=FE(24.2=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACATCTTCAAACAAGAATGAT
R:
CTTTGGATAGTAAAAATCTGCTGAGC
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]