DreEX6036406 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25213548-25216189:-
Coord C1 exon
chr9:25216080-25216189
Coord A exon
chr9:25215602-25215770
Coord C2 exon
chr9:25213548-25213650
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGACATGCTTTCTTTTTCAGGAC
3' ss Score
12.51
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAGAACCAGCTTCATACAAAGATGATCAATGCAGGCTTGGCGTATGGCTACGAGTATCTTGGAAACACACCACGACTGGTGATCACCCCTCTCACTGATCGCTGCTATAG
Seq A exon
GACTCTGTTTGGAGCTTTGCATTTACATCTTGGTGGAGCCCCCGAGGGACCTGCAGGTACAGGCAAAACCGAGACCACAAAAGATCTGGCTAAAGCCATAGCTAAGCAGTGTGTAGTATTCAACTGCTCTGATGGCCTGGACTACATTGCGCTTGGCAAGTTCTTTAAG
Seq C2 exon
GGCTTGTTGTCGGCTGGTGCCTGGGCCTGCTTTGACGAGTTCAACCGTATTGATCTAGAAGTGCTTTCAGTGGTGGCTCAGCAAATTCTAACCATCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(9.5=59.5)
A:
PF127742=AAA_6=FE(24.2=100)
C2:
PF127742=AAA_6=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCAGCTTCATACAAAGATGA
R:
TCTGGATGGTTAGAATTTGCTGAGC
Band lengths:
210-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]