BtaEX6010436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84891681-84898987:-
Coord C1 exon
chr2:84898739-84898987
Coord A exon
chr2:84893959-84894108
Coord C2 exon
chr2:84891681-84891863
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATAATTGTTTTCTATTAAGGGG
3' ss Score
5.53
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGAATTACTTCAGATTTGTTTCCTGGGGTGAAATTACCAAAACCAGATTACAACGATTTGCTGGGAGCTATCAAAGACAACTGTGACTCCATGAATTTGCAAATGACCAGATTCTTTTCTGAGAAGATTCTTCAGATATATGAAATGATGATTGTGCGTCATGGCTTTATGATTGTTGGAGAACCATTTGGAGGAAAAACCAGTGCATATCGCGTCTTAGCTGGAGCATTAAATGACCTATGTGAAAAG
Seq A exon
GGGTTAATGGAAGAAAACAAGGTTCAGATTACTGTTTTAAATCCTAAGTCCGTCACCATGGGTCAGCTGTATGGACAGTTTGATTTAGTGTCCCATGAGTGGTCCGACGGGATCCTTGCTGTCAGTTTCAGAGCATTTGCTGCTTCATCG
Seq C2 exon
ACACCAGATAGAAAGTGGTTAATTTTTGATGGGCCAGTAGATGCAGTATGGATTGAGAATATGAACACTGTGCTGGACGACAACAAAAAGCTATGTCTGATGAGTGGGGAGATTATCCAAATGTCGCCACAAATGAATCTTATTTTTGAGCCGATGGATTTAGAAGTTGCTTCTCCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(19.4=33.7)
A:
PF077289=AAA_5=FE(34.0=100)
C2:
PF077289=AAA_5=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACGATTTGCTGGGAGCTA
R:
ACTGCATCTACTGGCCCATCA
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]