HsaEX6017573 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196753523-196759948:-
Coord C1 exon
chr2:196759700-196759948
Coord A exon
chr2:196756379-196756528
Coord C2 exon
chr2:196753523-196753705
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTCATTAAGGGG
3' ss Score
7.24
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGAATTACTTCGGATTTGTTTCCTGGGGTAAAATTACCAAAACCAGATTACAATGATTTGCTGGCAGCTATCAAAGACAATTGTGCCTCCATGAATTTGCAAATGACTGCATTCTTTTCCGAGAAGATTCTTCAAGTATATGAAATGATGATTGTGCGTCATGGTTTTATGATTGTTGGAGAACCATTTGGAGGAAAAACTAGTGCATATCGTGTCTTAGCTGGAGCACTAAATGATATATGTGAAAAG
Seq A exon
GGGCTAATGGAAGAAAACAAAGTTCAAATAACTGTTTTAAATCCTAAGTCTGTCACCATGGGCCAACTGTACGGACAGTTTGATTCAGTGTCCCATGAATGGTCTGATGGGGTCCTTGCTGTCAGTTTTAGAGCATTTGCCTCTTCAGTG
Seq C2 exon
ACTCCAGATAGGAAATGGTTAATTTTTGATGGCCCAGTAGATGCAGTGTGGATTGAGAATATGAACACTGTGCTGGATGACAACAAGAAGCTATGTCTGATGAGTGGGGAGATTATTCAGATGTCACCACAAATGAATCTAATTTTTGAGCCAATGGATTTAGAAGTTGCTTCCCCTGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'34-36,'34-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(19.4=33.7)
A:
PF077289=AAA_5=FE(34.0=100)
C2:
PF077289=AAA_5=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCAGCTATCAAAGACA
R:
TCCACACTGCATCTACTGGGC
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)