GgaEX6041818 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10722572-10725448:-
Coord C1 exon
chr7:10725200-10725448
Coord A exon
chr7:10724272-10724421
Coord C2 exon
chr7:10722572-10722754
Length
150 bp
Sequences
Splice sites
3' ss Seq
TAACACTTCTGTACCTATAGGGG
3' ss Score
6.91
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGTATTACCTCTGATTTGTTTCCTGGTGTGAAGCTGCCAAAACCAGACTACAATGACCTGTTGGAAGCCATCAAAACAAACTGTGTTGCTATGAATTTGCAAATGACTGATGTATTTACTATGAAGATCCTGCAGATATATGAGATGATGATTGTGCGTCATGGCTTTATGATAGTTGGAGAGCCTTTTGGAGGAAAAACTTGTGCGTATCGAGTTCTGGCAGGAGCACTGGGGGACATATGCGAGAAG
Seq A exon
GGGCTGATGGAAGAAAACAAAGTTCAGATCACAGTTTTAAATCCCAAATCCATAACAATGGGTCAGCTATATGGACAATTTGATCCAGTTTCACATGAATGGTCAGATGGCATCCTAGCAGTGAGTTTCAGAGCATTTGCTTCTTCCCAA
Seq C2 exon
ACCCCAGATAGGAAGTGGCTAATTTTTGACGGACCAGTGGATGCAGTATGGATTGAGAATATGAATACTGTGCTTGATGATAATAAAAAGTTGTGCCTTATGAGTGGAGAGATCATCACAATGACACAGCAAATGAGCCTTATTTTTGAACCAATGGATTTAGAAGTTGCTTCTCCTGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(19.4=33.7)
A:
PF077289=AAA_5=FE(34.0=100)
C2:
PF077289=AAA_5=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGACCTGTTGGAAGCCA
R:
GCATCCACTGGTCCGTCAAAA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]