BtaEX6011480 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107157861-107161451:+
Coord C1 exon
chr2:107157861-107158019
Coord A exon
chr2:107160061-107160240
Coord C2 exon
chr2:107161306-107161451
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTGCCCATCTCTCCCTGCAGGGA
3' ss Score
12.29
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCAGCCAGGCCAGTCAGGATGAAATCACAGCCTCTGCCTATCAAGCCGTCATCTTGGACCAGGAGTACAACAATGAACCGGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAGGGATGCATGGTGGTCTACCAG
Seq A exon
GGAGGCACATCCCGGGCCAACAGCGTGGAGCCTGTGCCCTCCACCCGGCTATTCCAGGTCCGAGGAACCAGCGCCAACAACACCAAGGCCTTTGAGGTCTCACCCCGGGCCGCCTCCCTCAACTCCAACGACGTCTTCATCCTCAAGACTCAGTCCTGCTGCTACTTGTGGTGTGGGAAG
Seq C2 exon
GGTTGCAGTGGAGATGAGCGGGAGATGGCCAAGATGGTTGCTGACACTGTCTCCCGGACTGAGAAGCAAGTGGTGGTGGAGGGGCAGGAGCCGGCCAACTTCTGGCTGGCCCTGGGCGGGAAGGCCCCCTATGCCAGCACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCTCTGCCTATCAAGC
R:
CAGGGCCAGCCAGAAGTTG
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]