DreEX6090011 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:211637-212475:-
Coord C1 exon
chr11:212317-212475
Coord A exon
chr11:211905-212084
Coord C2 exon
chr11:211637-211779
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTCCTCTGCTCAGGGT
3' ss Score
9.66
5' ss Seq
AAAGTACGA
5' ss Score
4.65
Exon sequences
Seq C1 exon
GGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAG
Seq A exon
GGTGGGACGTCCCGTAAGGGCCCAGTGGAGCCAGAGCCGCCCGTCCGGCTGTTCCAGATCTGCGGCTCGCACCCATCCAGCACTCGCGCCGTGGAGGTTCCAGCGCTGGCGGCGTCGCTCAACTCCAACGACGTGTTCCTGCTGAAGAGCCAGAGCGGAGTTTACCTGTGGTACGGGAAA
Seq C2 exon
GGCTCCAGCGGGGACGAGCGTGCGATGGCGAAGGATCTGAGTGTGATCATGGGTCGCTCAGAGCAGGTGATGGCGGAGGGTCAGGAGCCGGAGGAGTTCTGGCAGAGTCTGGGTGGACGAACGCCATACGCCAGCGACCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.150 C2=0.417
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(49.3=56.7)
C2:
PF0062617=Gelsolin=PD(47.8=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGGATGAAGTGACGGC
R:
AGACTCTGCCAGAACTCCTCC
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]