BtaEX6021844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55993091-55996161:+
Coord C1 exon
chr5:55993091-55993249
Coord A exon
chr5:55994199-55994378
Coord C2 exon
chr5:55996016-55996161
Length
180 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTCTTTCTCTCTAGGGT
3' ss Score
12.69
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGCTGCCACGCCTCACAGGATGAGCTGGCAGCCTCGGCATATCAGGCGGTAGAGGTGGACCAGCAGTTTGAAGGGGCCCCTGTGCAGGTTCGGGTTACCATGGGAAAGGAGCCGCGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTCATCTTTGAG
Seq A exon
GGTGGGACTTCTAGGAAGGGAAATGCTGAGCCGGATCCTCCAGTAAGACTCTTCCAGATTCAAGGACATAACAAATCTAACACCAAAGCAGTGGAGGTCCCAGCCTTCACCTCCTCCCTAAACTCCAATGATGTCTTTCTGCTGAGGACGCAGGCAGAGCACTACCTGTGGTTTGGCAAG
Seq C2 exon
GGGTCTAGTGGGGATGAGCGGGCGATGGCTAAGGAGCTGGCCGGACTTCTCTGTGACGGTACTGAGAACACAGTGGCTGAGGGCCAGGAGCCAGCTGAGTTCTGGGACCTGCTGGGAGGGAAAACTCCCTATGCCAGTGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.233 C2=0.020
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAGGCGGTAGAGGTGGAC
R:
AGTTTTCCCTCCCAGCAGGTC
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]