MmuEX6051735 @ mm9
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126447957-126450709:+
Coord C1 exon
chr10:126447957-126448115
Coord A exon
chr10:126448755-126448934
Coord C2 exon
chr10:126450564-126450709
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTCTGAACTCTGCTTTTCAGGGC
3' ss Score
8.09
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCCGCCACGCATCCCGGGATGAGCTGGCAGCCTCAGCCTATCGGGCAGTGGAGGTGGATCAGCAGTTTGATGGAGCCCCTGTGCAGGTCCGGGTTAGCATGGGGAAGGAGCCACGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTTATCTACGAG
Seq A exon
GGCGGGACTTCCAGGAAGGGAAACGAGGAGCCGGACCCTCCAGTAAGGCTCTTCCAGATCCACGGGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTGCGGACTCAGGCAGAGCACTACCTGTGGTACGGCAAG
Seq C2 exon
GGGTCTAGTGGGGACGAGCGGGCGATGGCTAAGGAGCTGGTCGACCTTCTCTGTGATGGCAATGCGGACACTGTGGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAACAGCCTACGCTAATGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.367 C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGGTGGATCAGCAGTT
R:
GCGTAGGCTGTTTTTCCTCCC
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: