RnoEX6031800 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70301780-70304146:+
Coord C1 exon
chr7:70301780-70301938
Coord A exon
chr7:70302536-70302715
Coord C2 exon
chr7:70304001-70304146
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTCTCCTCTCCAGGGC
3' ss Score
12
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGACGCCACGCTTCCCAGGATGAGCTGGCAGCCTCGGCCTACCAGGCGGTGGAGGTGGATCAGCAGTTTGGTGGAGCCCCGGTGCAAGTCCGGGTTAGCATGGGGAAAGAGCCACGCCACTTCATGGCCATCTTCAAAGGGAAGCTGGTTATCTATGAG
Seq A exon
GGCGGGACTTCCAGGAAGGGAAATGTGGAGCCTGACCCTCCAGTAAGACTCTTCCAGATCCACGGGAACGACAAATCCAATACCAAAGCAGTGGAAGTCTCGGCCTCCGCTTCCTCCCTCAACTCTAATGATGTCTTTCTGCTTTGGACTCAGGCGGAGCACTACCTGTGGTATGGCAAG
Seq C2 exon
GGGTCAAGTGGGGACGAACGGGCGATGGCTAAGGAGCTGGCAGAGCTTCTCTGTGATGGTGACGCAGACACTGTAGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAGCCCCCTACGCTAACGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'15-16,'15-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.350 C2=0.204
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(48.6=56.7)
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGATCAGCAGTTTGG
R:
GTTAGCGTAGGGGGCTTTTCC
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]