GgaEX1063098 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22034028-22034669:-
Coord C1 exon
chr7:22034511-22034669
Coord A exon
chr7:22034258-22034437
Coord C2 exon
chr7:22034028-22034173
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCTATCCCCGCTGTTCCCAGAAC
3' ss Score
8.19
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGCCGCCATGCCAGCACGGATGAGCTGGCCGCCTCGGCCTACCAAGCCGTCTTCCTGGACCAGAAGTACAACAACGAGCCTGTGCAGGTGCGCGTCACCATGGGCAAGGAGCCGGCCCACCTGATGGCGATCTTCAAGGGCAAGATGGTGGTGTACGAG
Seq A exon
AACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTCGGCTCTTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
Seq C2 exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACATCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACGCCAACAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-7/11=6-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.067 C2=0.163
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
PF0062617=Gelsolin=PU(47.8=55.0)
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCAAGCCGTCTTCCTGGA
R:
TCTTGCCGCCCAGAGCTAC
Band lengths:
245-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]