BtaEX6011481 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107157138-107160240:+
Coord C1 exon
chr2:107157138-107157275
Coord A exon
chr2:107157861-107158019
Coord C2 exon
chr2:107160061-107160240
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTGCACATCCCCAGGGC
3' ss Score
6.57
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
ATGTGGCGCATCGAGAACCTAGAGCTGGTGCCTGTGAATACCAAGTGGCTTGGCCACTTCTTTGGGGGCGACTGCTACCTGCTGCTCTACACCTACTTCATCAACGAGAAGCCGCACTACTTGCTCTACATCTGGCAG
Seq A exon
GGCAGCCAGGCCAGTCAGGATGAAATCACAGCCTCTGCCTATCAAGCCGTCATCTTGGACCAGGAGTACAACAATGAACCGGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAGGGATGCATGGTGGTCTACCAG
Seq C2 exon
GGAGGCACATCCCGGGCCAACAGCGTGGAGCCTGTGCCCTCCACCCGGCTATTCCAGGTCCGAGGAACCAGCGCCAACAACACCAAGGCCTTTGAGGTCTCACCCCGGGCCGCCTCCCTCAACTCCAACGACGTCTTCATCCTCAAGACTCAGTCCTGCTGCTACTTGTGGTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'15-16,'15-13,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTACCTGCTGCTCTACA
R:
CACACCACAAGTAGCAGCAGG
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]