GgaEX1063097 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22034258-22034961:-
Coord C1 exon
chr7:22034824-22034961
Coord A exon
chr7:22034511-22034669
Coord C2 exon
chr7:22034258-22034437
Length
159 bp
Sequences
Splice sites
3' ss Seq
GAGAGCACGTCCCCACACAGGGC
3' ss Score
2.66
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCTGGCGGGTGGAGAACCAGGAGCTGGTGCCCGTGGAGAAGCGGTGGTTGGGCCATTTCTACGGCGGGGACTGCTACCTGGTGCTCTACACCTACTACGTGGGGCCCAAGGTGAACCGCATCATCTACATCTGGCAG
Seq A exon
GGCCGCCATGCCAGCACGGATGAGCTGGCCGCCTCGGCCTACCAAGCCGTCTTCCTGGACCAGAAGTACAACAACGAGCCTGTGCAGGTGCGCGTCACCATGGGCAAGGAGCCGGCCCACCTGATGGCGATCTTCAAGGGCAAGATGGTGGTGTACGAG
Seq C2 exon
AACGGCTCCTCGCGGGCGGGCGGCACGGAGCCGGCGTCCTCCACTCGGCTCTTCCACGTGCACGGCACCAACGAGTACAACACCAAGGCCTTCGAGGTGCCCGTCCGAGCCGCTTCTCTCAACTCCAACGATGTCTTTGTGCTCAAGACGCCCAGCTCCTGCTACCTCTGGTATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-6/11=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.067
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(47.8=55.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGCTACCTGGTGCTCTA
R:
CCCATACCAGAGGTAGCAGGA
Band lengths:
247-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]