DreEX0016313 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:211905-212877:-
Coord C1 exon
chr11:212740-212877
Coord A exon
chr11:212317-212475
Coord C2 exon
chr11:211905-212084
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTGTGTCGTCCTCAGGGC
3' ss Score
12.83
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTGTGGCGTATCGAGAACCTGGAGCTGGCGGAGGTCAGCAAAGCTACACACGGGTTTTTCTATGGAGGAGACTGCTATCTGATTCTCTACAGCTACGAGGTCAACGGCAGGAAAAACTACATCCTCTACATGTGGAGG
Seq A exon
GGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAG
Seq C2 exon
GGTGGGACGTCCCGTAAGGGCCCAGTGGAGCCAGAGCCGCCCGTCCGGCTGTTCCAGATCTGCGGCTCGCACCCATCCAGCACTCGCGCCGTGGAGGTTCCAGCGCTGGCGGCGTCGCTCAACTCCAACGACGTGTTCCTGCTGAAGAGCCAGAGCGGAGTTTACCTGTGGTACGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.150
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(49.3=56.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAGCAAAGCTACACACG
R:
CTTCAGCAGGAACACGTCGTT
Band lengths:
254-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]