RnoEX6031801 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70301560-70302715:+
Coord C1 exon
chr7:70301560-70301697
Coord A exon
chr7:70301780-70301938
Coord C2 exon
chr7:70302536-70302715
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCACCACCACAGGGA
3' ss Score
9.89
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTGGAGAATTGAGAACCTGGAGCTGGTCCCTGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTATCTGGTTCTCTACACGTATGATGTGAACGGGAAACCCTGTTACATCTTGTATATCTGGCAG
Seq A exon
GGACGCCACGCTTCCCAGGATGAGCTGGCAGCCTCGGCCTACCAGGCGGTGGAGGTGGATCAGCAGTTTGGTGGAGCCCCGGTGCAAGTCCGGGTTAGCATGGGGAAAGAGCCACGCCACTTCATGGCCATCTTCAAAGGGAAGCTGGTTATCTATGAG
Seq C2 exon
GGCGGGACTTCCAGGAAGGGAAATGTGGAGCCTGACCCTCCAGTAAGACTCTTCCAGATCCACGGGAACGACAAATCCAATACCAAAGCAGTGGAAGTCTCGGCCTCCGCTTCCTCCCTCAACTCTAATGATGTCTTTCTGCTTTGGACTCAGGCGGAGCACTACCTGTGGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTTCTACGGGGGAGACT
R:
CGCCTGAGTCCAAAGCAGAAA
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]