BtaEX6021845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55992848-55994378:+
Coord C1 exon
chr5:55992848-55992985
Coord A exon
chr5:55993091-55993249
Coord C2 exon
chr5:55994199-55994378
Length
159 bp
Sequences
Splice sites
3' ss Seq
CACCCTTCTCACCCCTGCAGGGC
3' ss Score
11.59
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCTGGAGGATAGAAAACCTGGAGCTGGTCCCCGTGGAGCACCAGTGGTATGGCTTCTTTTATGGGGGAGACTGCTATCTGGTTCTCTATACGTACGAGATGCATGGGAAGCCTCATTACATCCTGTATATCTGGCAG
Seq A exon
GGCTGCCACGCCTCACAGGATGAGCTGGCAGCCTCGGCATATCAGGCGGTAGAGGTGGACCAGCAGTTTGAAGGGGCCCCTGTGCAGGTTCGGGTTACCATGGGAAAGGAGCCGCGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTCATCTTTGAG
Seq C2 exon
GGTGGGACTTCTAGGAAGGGAAATGCTGAGCCGGATCCTCCAGTAAGACTCTTCCAGATTCAAGGACATAACAAATCTAACACCAAAGCAGTGGAGGTCCCAGCCTTCACCTCCTCCCTAAACTCCAATGATGTCTTTCTGCTGAGGACGCAGGCAGAGCACTACCTGTGGTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.233
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCAGTGGTATGGCTTC
R:
CTGCGTCCTCAGCAGAAAGAC
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]