BtaEX6011482 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107156952-107158019:+
Coord C1 exon
chr2:107156952-107157052
Coord A exon
chr2:107157138-107157275
Coord C2 exon
chr2:107157861-107158019
Length
138 bp
Sequences
Splice sites
3' ss Seq
TAGCCTGGTACCGGCCCCAGATG
3' ss Score
2.54
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCCATGTCCATGCATGTCCAGCCTCAGGTGGCTGCCCAGCAGAAGATGGTGGACGATGGGAGTGGGGAGGTGCAG
Seq A exon
ATGTGGCGCATCGAGAACCTAGAGCTGGTGCCTGTGAATACCAAGTGGCTTGGCCACTTCTTTGGGGGCGACTGCTACCTGCTGCTCTACACCTACTTCATCAACGAGAAGCCGCACTACTTGCTCTACATCTGGCAG
Seq C2 exon
GGCAGCCAGGCCAGTCAGGATGAAATCACAGCCTCTGCCTATCAAGCCGTCATCTTGGACCAGGAGTACAACAATGAACCGGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAGGGATGCATGGTGGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(48.2=87.0)
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGGAACAGGTGAAGT
R:
ACCACCATGCATCCCTTGAAG
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]