DreEX6090010 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:212317-213273:-
Coord C1 exon
chr11:213173-213273
Coord A exon
chr11:212740-212877
Coord C2 exon
chr11:212317-212475
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTGTCTCTTCATGTGCAGGTG
3' ss Score
10.4
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTGATGTTCCTCAGGAGAAGTTTGATGCCAGCCGGATGCACATGATGCCGGAGGTGGCGGCGCAGGAGCGCATGGTGGACGACGGCAGCGGGGAGAAACAG
Seq A exon
GTGTGGCGTATCGAGAACCTGGAGCTGGCGGAGGTCAGCAAAGCTACACACGGGTTTTTCTATGGAGGAGACTGCTATCTGATTCTCTACAGCTACGAGGTCAACGGCAGGAAAAACTACATCCTCTACATGTGGAGG
Seq C2 exon
GGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(48.2=87.0)
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGTTTGATGCCAGCC
R:
AGATCACCATCTTGCCCTTGA
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]