RnoEX0013800 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70301019-70301938:+
Coord C1 exon
chr7:70301019-70301119
Coord A exon
chr7:70301560-70301697
Coord C2 exon
chr7:70301780-70301938
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTCTCTTGTACCCAGGTC
3' ss Score
9.96
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTAAAATCTTCCAGGACAAGTTCGACGTGACTCTGCTACACACTAAGCCAGAAGTGGCTGCTCAGGAAAGAATGGTGGACGACGGCAACGGCAAGGTTGAG
Seq A exon
GTCTGGAGAATTGAGAACCTGGAGCTGGTCCCTGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTATCTGGTTCTCTACACGTATGATGTGAACGGGAAACCCTGTTACATCTTGTATATCTGGCAG
Seq C2 exon
GGACGCCACGCTTCCCAGGATGAGCTGGCAGCCTCGGCCTACCAGGCGGTGGAGGTGGATCAGCAGTTTGGTGGAGCCCCGGTGCAAGTCCGGGTTAGCATGGGGAAAGAGCCACGCCACTTCATGGCCATCTTCAAAGGGAAGCTGGTTATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'12-13,'12-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(48.2=87.0)
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGACAAGTTCGACGTGAC
R:
AGATAACCAGCTTCCCTTTGAA
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]