BtaEX6021846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55992260-55993249:+
Coord C1 exon
chr5:55992260-55992360
Coord A exon
chr5:55992848-55992985
Coord C2 exon
chr5:55993091-55993249
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTTCTATGCCCAGGTC
3' ss Score
9.26
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGAAGGTTTTCCAGGATAAATTTGATGTAACTCTGCTGCACACCAAACCAGAGGTGGCAGCCCAGGAAAGAATGGTGGATGACGGCAACGGCAAAGTTGAG
Seq A exon
GTCTGGAGGATAGAAAACCTGGAGCTGGTCCCCGTGGAGCACCAGTGGTATGGCTTCTTTTATGGGGGAGACTGCTATCTGGTTCTCTATACGTACGAGATGCATGGGAAGCCTCATTACATCCTGTATATCTGGCAG
Seq C2 exon
GGCTGCCACGCCTCACAGGATGAGCTGGCAGCCTCGGCATATCAGGCGGTAGAGGTGGACCAGCAGTTTGAAGGGGCCCCTGTGCAGGTTCGGGTTACCATGGGAAAGGAGCCGCGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTCATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(48.2=87.0)
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGATGTAACTCTGCTGCACAC
R:
CTCAAAGATGACCAGCTTTCCT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]