MmuEX6051736 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127009977-127011059:+
Coord C1 exon
chr10:127009977-127010077
Coord A exon
chr10:127010522-127010659
Coord C2 exon
chr10:127010901-127011059
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCCTCTTGTGTCCAGGTC
3' ss Score
9.41
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTAAAATCTTCCAGGACAAGTTCGATGTGTCTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGCCAGGTTGAG
Seq A exon
GTCTGGAGAATTGAGAACCTGGAGCTGGTCCCCGTGGAATACCAGTGGCATGGCTTCTTCTACGGGGGAGACTGCTATCTGGTTCTCTACACGTACGATGTGAACGGGAAACCCCATTACATCTTGTACATCTGGCAG
Seq C2 exon
GGCCGCCACGCATCCCGGGATGAGCTGGCAGCCTCAGCCTATCGGGCAGTGGAGGTGGATCAGCAGTTTGATGGAGCCCCTGTGCAGGTCCGGGTTAGCATGGGGAAGGAGCCACGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGTTATCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'15-25,'15-16,20-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(48.2=87.0)
C2:
PF0062617=Gelsolin=PD(49.4=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGACAAGTTCGATGTGT
R:
CCAGCTTTCCTTTGAAGATGGC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types