GgaEX1063096 @ galGal3
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24090855-24091490:-
Coord C1 exon
chr7:24091390-24091490
Coord A exon
chr7:24091130-24091267
Coord C2 exon
chr7:24090855-24090975
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGTGACACCATCCCACCAGGTC
3' ss Score
6.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTAAGGTGGAACAGGTGAAGTTTGACGCCACCACAATGCATGTCAAGCCTGAAGTGGCCGCCCAGCAGAAGATGGTGGATGATGGATCTGGGGAGGCAGAG
Seq A exon
GTCTGGCGGGTGGAGAACCAGGAGCTGGTGCCCGTGGAGAAGCGGTGGTTGGGCCATTTCTACGGCGGGGACTGCTACCTGGTGCTCTACACCTACTACGTGGGGCCCAAGGTGAACCGCATCATCTACATCTGGCAG
Seq C2 exon
GGCCGCCATGCCAGCACGGATGAGCTGGCCGCCTCGGCCTACCAAGCCGTCTTCCTGGACCAGAAGTACAACAACGAGCCTGTGCAGGTGCGCGTCACCATGGGCAAGGAGCCGGCCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
PF0062617=Gelsolin=PU(51.9=87.0)
C2:
PF0062617=Gelsolin=FE(48.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAACAGGTGAAGTTTGAC
R:
GCTCCTTGCCCATGGTGAC
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]