BtaEX6011486 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107154853-107155526:+
Coord C1 exon
chr2:107154853-107155055
Coord A exon
chr2:107155171-107155249
Coord C2 exon
chr2:107155428-107155526
Length
79 bp
Sequences
Splice sites
3' ss Seq
GCCGCATCTTTGTCCTGCAGTGT
3' ss Score
7.58
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCATGAACCTGGCCAAGGAGATCCGCGACCAGGAGCGGGGTGGGCGAACCTACGTGGGCGTGGTGGACGGGGAGGACGAGAAGGCCTCACCACAGCTGATGGAGATCATGAACCACGTGCTGGGCCAACGGAAGGAGCTGAAGGCCGCTGTGGCCGACACGGTGGTGGAGCCGGCCCTCAAGGCTGCCCTCAAGTTGTACCA
Seq A exon
TGTGTCTGACTCAGAGGGAAAGGTGGTGGTCAGAGAAATCGCCACGCAGCCACTCACACAAGACCTGCTCAGTCACGAG
Seq C2 exon
GACTGTTACATCCTGGACCAGGGAGGCCTAAAGATCTATGTGTGGAAGGGGAAGAATGCCAACGCCCAGGAGAAGAAGGAAGCCATGAACCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
PF0062617=Gelsolin=PU(19.7=55.6)
C2:
PF0062617=Gelsolin=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCACAGCTGATGGAGA
R:
GGCATTCTTCCCCTTCCACAC
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]