DreEX6090006 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:214426-215172:-
Coord C1 exon
chr11:214967-215172
Coord A exon
chr11:214798-214876
Coord C2 exon
chr11:214426-214524
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACAATGGTCCTGCTGTGCAGTGT
3' ss Score
5.01
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCATGATGCTGGCCAAGGATATCCGGGACCGAGAGCGCGGCGGGCGGGCAGAGATCGGGGTGATTGAGGGCGATGCGGAGGCCGCCGCTCCGCTGCTGATGCAGGTGATGCTGAGCATTCTGGGAGAGCGACCCTCGACCCTACCCAGCGGCACGCCGGACGACGTCACTGACCGCGAGCAGATGGCCAAACTCACCCTCTACCA
Seq A exon
TGTGTCAGATGCCAACGGGACGATGCAGATCACCGAGATCGCAACCAGTCCACTAACCCAGGACCTGCTGAATCATGAC
Seq C2 exon
GACTGCTACATCTTGGACCAGGGGGGCGTGTCCATCTTCGTGTGGAAGGGAAAGATGGCCAATAAGGCGGAGAGACAAGCAGCGATGACCCGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.5=43.5)
A:
PF0062617=Gelsolin=PU(20.8=59.3)
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCGGGGTGATTGAGGG
R:
CCCCTGGTCCAAGATGTAGCA
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]