BtaEX6021850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55990344-55991334:+
Coord C1 exon
chr5:55990344-55990546
Coord A exon
chr5:55991029-55991107
Coord C2 exon
chr5:55991236-55991334
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTCCCCTTCTCCAGTGT
3' ss Score
8.24
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCAATGCTTCTGGCAAAGGATATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAGATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCGGAGCTGATGAAGGTCCTTCAGGACACCCTCGGCCGGCGCTCCATTATCCAACCGGCAGTCCCAGATGAGGTCATAGATCAGCAGCAGAAATCAAACATCACATTGTATCA
Seq A exon
TGTCTCGGATTCATCTGGGCAGCTGGTGGTCACAGAGGTAGCGACGAGGCCTCTGGTCCAGGACTTACTGAATCCTGAT
Seq C2 exon
GACTGCTACATCCTGGACCAAAGTGGAACCAAGATCTATGTGTGGAAAGGAAGAGGAGCCACAAAGGTTGAGAAACAGATGGCCATGTCTAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
PF0062617=Gelsolin=PU(21.8=63.0)
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCGAGGGAGACAAGGAGG
R:
TGGTTCCACTTTGGTCCAGGA
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]