MmuEX6051740 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127008132-127009059:+
Coord C1 exon
chr10:127008132-127008334
Coord A exon
chr10:127008763-127008841
Coord C2 exon
chr10:127008961-127009059
Length
79 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTCTCCTTCACCAGTGT
3' ss Score
6.74
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTATGCTTCTGGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGTGCTGAAATTGGGGTGATTGAGGGAGACAAGGAGGCGGCCAGCCCAGGGCTGATGACAGTCCTCCAGGATACCCTTGGTCGACGCTCCATGATAAAGCCTGCAGTTTCTGATGAGATCATGGACCAACAACAGAAATCAAGTATCATGTTATATCA
Seq A exon
TGTCTCCGACACAGCTGGGCAGCTGTCAGTCACAGAGGTGGCAACAAGGCCCCTGGTCCAGGACCTACTGAACCACGAT
Seq C2 exon
GACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAGGCAAAGGAGCCACCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'3-21,'3-11,14-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
PF0062617=Gelsolin=PU(21.8=63.0)
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGATACCCTTGGTCGAC
R:
CGCCTGTTTCTCAACCTTGGT
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types