GgaEX1063091 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22035518-22036516:-
Coord C1 exon
chr7:22036314-22036516
Coord A exon
chr7:22035740-22035818
Coord C2 exon
chr7:22035518-22035616
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTCTCTCCACCAGTGT
3' ss Score
10.12
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCAATGACCCTGGCCAAGGACATTCGGGACCGAGAGCGTGCGGGACGTGCGAAGGTTGGCGTGGTGGAGGGGGAGAATGAGGCGGCCTCACCTGAGCTGATGCAGGCCTTGACACATGTGCTGGGGGAGAAGAAGAACATCAAGGCAGCCACACCCGATGAACAAGTTCACCAGGCGCTCAACAGTGCCCTCAAGCTCTACCA
Seq A exon
TGTCTCTGATGCCAGTGGGAACCTGGTCATACAAGAGGTAGCAATTCGCCCCTTGACTCAAGACATGCTCCAGCATGAG
Seq C2 exon
GACTGCTACATCCTTGATCAAGCAGGTCTCAAGATCTTTGTGTGGAAGGGCAAGAATGCCAACAAGGAGGAGAAGCAGCAGGCAATGAGCAGGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
PF0062617=Gelsolin=PU(21.8=63.0)
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGGGGGAGAAGAAGA
R:
GCTGCTTCTCCTCCTTGTTGG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]