RnoEX6031804 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299164-70300078:+
Coord C1 exon
chr7:70299164-70299366
Coord A exon
chr7:70299795-70299873
Coord C2 exon
chr7:70299980-70300078
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAATCTCTCTTCTTCACCAGTGT
3' ss Score
6.9
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTATGCTTCTAGCAAAGGACATTCGGGACAGGGAGCGAGGGGGCCGAGCTGAAATCGGGGTGATTGAGGGAGACAAAGAGGCAGCCAGCCCAGAACTGATGACGGTTCTCCAGAATACCCTTGGCCGACGCTCCATTATCAAGCCCGCAGTTCCTGATGAGGTCACCGATCAGCAGCAGAAGTCAACCATCATGTTGTATCA
Seq A exon
TGTCTCCGACACAACTGGGCAGCTGTCGGTCACAGAAGTGGCAACAAGGCCCCTGGTCCAGGAGCTACTGAACCATGAT
Seq C2 exon
GACTGCTATATCCTGGACCAAAGTGGCACCAAGATCTACGTATGGAAAGGCAAAGGAGCCACCAAGGTGGAGAAACAGGCGGCCATGTCCAAAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.0=44.1)
A:
PF0062617=Gelsolin=PU(21.8=63.0)
C2:
PF0062617=Gelsolin=FE(41.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGAATACCCTTGGCCGA
R:
GTTTCTCCACCTTGGTGGCTC
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]