BtaEX6012175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011390 | CHRND
Description
Bos taurus cholinergic receptor, nicotinic, delta (CHRND), mRNA. [Source:RefSeq mRNA;Acc:NM_174271]
Coordinates
chr2:120977036-120979291:+
Coord C1 exon
chr2:120977036-120977145
Coord A exon
chr2:120977908-120978108
Coord C2 exon
chr2:120979180-120979291
Length
201 bp
Sequences
Splice sites
3' ss Seq
CGTCCACATGTCTCCCTCAGAGA
3' ss Score
8.28
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
Exon sequences
Seq C1 exon
TTCGCTCAAGTACACGACCAAGGAGATCACCCTGAGCCTGAAGCAGGCTGAAGAAGATGGCCGCTCTTACCCCGTGGAGTGGATCATCATCGATCCCGAGGGCTTCACAG
Seq A exon
AGAACGGGGAATGGGAGATAGTGCACCGGCCAGCCAGGGTCAACGTGGACCCCAGTGTGCCGCTGGACAGTCCTAACCGCCAGGACGTCACCTTCTACCTCATTATCCGCCGCAAACCGCTCTTCTACGTCATCAACATCCTGGTGCCCTGTGTGCTCATCTCTTTCATGATCAACCTGGTCTTCTACTTGCCAGCCGACT
Seq C2 exon
GTGGTGAGAAGACATCCATGGCCATCTCGGTGCTCCTGGCCCAGTCTGTCTTCCTGCTGCTCATCTCCAAGCGGCTGCCAGCCACGTCCATGGCCATCCCCCTCATCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011390-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100)
A:
PF0293118=Neur_chan_LBD=PD(17.6=57.4),PF0293211=Neur_chan_memb=PU(8.9=30.9)
C2:
PF0293211=Neur_chan_memb=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCAAGTACACGACCAAGG
R:
TTGCCGATGAGGGGGATGG
Band lengths:
220-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]