DreEX6095281 @ danRer10
Exon Skipping
Gene
ENSDARG00000019342 | chrnd
Description
cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
Coordinates
chr24:25542994-25543631:-
Coord C1 exon
chr24:25543522-25543631
Coord A exon
chr24:25543251-25543451
Coord C2 exon
chr24:25542994-25543105
Length
201 bp
Sequences
Splice sites
3' ss Seq
AGATTTATTTATTTCTGCAGAAA
3' ss Score
7.54
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTCGTTAACTTACAACGCTAAAGAGATTAGCTTAAATCTGAAAATGGAGCAGGAAAATACAACATACTACAAGGTGGAATGGATCATCATTGATCCTGAAGGATTCACAG
Seq A exon
AAAATGGTGAGTGGGAAATTGTCCACAAGCCTGCCAGGAGGAACATTTATAAAAGCATCCCGAAAGAAAGCAACAAGCACCAGGATATCACCTTTTACCTGATCATTAAGCGTAAACCGCTGTTCTACATTGTCAACATAATCATTCCCTGTGTGCTCATCTCTTTCTTGGCCTCGCTCGTCTATTACCTGCCTGCTGACA
Seq C2 exon
GTGGAGAGAAGATGACGCTGTCAATCTCTGTGCTTCTGGCTCAGTCTGTGTTCCTGCTGCTGATTTCACAGCGTCTGCCTGAGACGTCTATGGCTGTTCCTTTAATTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019342-'5-10,'5-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100)
A:
PF0293118=Neur_chan_LBD=PD(17.6=57.4),PF0293211=Neur_chan_memb=PU(8.8=30.9)
C2:
PF0293211=Neur_chan_memb=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTTAACTTACAACGCTAAAGAGA
R:
GACAATTAAAGGAACAGCCATAGACG
Band lengths:
220-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]