MmuEX6026011 @ mm9
Exon Skipping
Gene
ENSMUSG00000026251 | Chrnd
Description
cholinergic receptor, nicotinic, delta polypeptide [Source:MGI Symbol;Acc:MGI:87893]
Coordinates
chr1:89089421-89092171:+
Coord C1 exon
chr1:89089421-89089530
Coord A exon
chr1:89091375-89091575
Coord C2 exon
chr1:89092060-89092171
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTGTACCTTCCTCAGAGA
3' ss Score
8.41
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTCACTCAAGTATACAGCCAAGGAGATCACACTTAGCCTGAAGCAGGAGGAGGAAAACAACCGCTCTTACCCCATCGAGTGGATCATCATTGACCCTGAAGGTTTCACAG
Seq A exon
AGAACGGTGAGTGGGAGATAGTGCATCGGGCAGCCAAGCTCAATGTGGACCCCAGTGTCCCGATGGACAGCACCAACCACCAAGATGTCACCTTCTACCTTATCATCCGCCGCAAGCCCCTCTTCTACATCATCAACATTCTGGTACCCTGCGTGCTCATCTCCTTCATGATCAACCTAGTCTTCTACCTGCCAGGCGACT
Seq C2 exon
GTGGAGAGAAGACCTCCGTGGCCATCTCAGTGCTCCTGGCCCAATCTGTCTTCCTGCTGCTTATCTCCAAGAGGCTGCCGGCCACTTCCATGGCCATCCCCTTGGTAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026251-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.7=100),PF0181912=Levi_coat=FE(46.2=100)
A:
PF0293118=Neur_chan_LBD=PD(17.6=57.4),PF0181912=Levi_coat=PD(45.0=52.9),PF0293211=Neur_chan_memb=PU(8.9=30.9)
C2:
PF0293211=Neur_chan_memb=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTCAAGTATACAGCCAAGGA
R:
GCCTACCAAGGGGATGGCC
Band lengths:
220-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: