BtaEX6012180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120992840-120993968:+
Coord C1 exon
chr2:120992840-120993056
Coord A exon
chr2:120993245-120993378
Coord C2 exon
chr2:120993663-120993968
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTACCCTTCCTCATCAACAGAGA
3' ss Score
9.02
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTGTTCCTGCGGCTCTTGCCCCAGCTGTTACGGATGCACGTTCGCCCACTGGCCCCAGTGGCTGTGCAGGATGCCCACCCCCGTCTACAGAATGGTTCCTCCTCAGGGTGGCCAATCACAGCTGGGGAGGAGGTGGCCCTCTGCCTGCCCCGCAGTGAGCTTCTTTTCCGGCAGCGCCAGCGCAATGGGCTGGTGAGGGCAGCGCTGGAGAAGCTTG
Seq A exon
AGAAAGGCCCAGAGTCAGGGCAGAGCCCAGAATGGTGTGGCAGCCTGAAGCAGGCCGCCCCGGCCATCCAGGCCTGCGTGGAGGCCTGCAACCTCATTGCCCGTGCCCGGCACCAGCAGACTCACTTTGACAGT
Seq C2 exon
GGGAACAAGGAGTGGTTCCTGGTGGGCCGAGTGCTGGATCGAGTCTGCTTCCTGGCCATGCTCTCGCTCTTTGTCTGTGGCACTGCTGGCATCTTCCTCATGGCCCACTACAACCGAGTACCTGCCCTGCCTTTTCCTGGGGACCCCCGCTCCTATCTGCCCTCATCTGACTGAGCTGACCAATTGCTGCTAGCCACGTGGAGTCTTATCAGCTGTTTTCTGCTCCTGAGGTCATGAGTATACTATTTGGGAAACACTCTTGGGGGATATGTGAGAAAAGCTGGGGAAATAAAGAGACAGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.067 C2=0.035
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(29.1=100)
A:
PF0293211=Neur_chan_memb=FE(17.8=100)
C2:
PF0293211=Neur_chan_memb=PD(12.6=53.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCGTCTACAGAATGGTT
R:
CCATGAGGAAGATGCCAGCAG
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]