MmuEX6026017 @ mm10
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:87210524-87212694:+
Coord C1 exon
chr1:87210524-87210740
Coord A exon
chr1:87210903-87211036
Coord C2 exon
chr1:87211315-87212694
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGACTTTATTTCCCCATCAGAGA
3' ss Score
6.91
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTGTTCCTGAGGCTCCTGCCCCAGCTGTTACGGATGCATGTGCGCCCACTAGCTCCAGCTGCTGTCCAGGATGCCCGGTTCCGACTCCAGAATGGCTCTTCCTCAGGGTGGCCCATCATGGCTCGAGAGGAAGGGGACCTCTGTCTGCCTCGAAGCGAACTCCTCTTTAGGCAAAGGCAGCGCAATGGATTAGTGCAGGCAGTATTGGAGAAGCTAG
Seq A exon
AGAATGGTCCAGAAGTGAGGCAGAGCCAGGAGTTCTGTGGCAGCCTGAAGCAAGCCTCCCCAGCCATCCAGGCCTGTGTGGATGCCTGTAACCTCATGGCTCGTGCCCGACGCCAGCAGAGTCACTTTGACAGT
Seq C2 exon
GGGAACGAGGAGTGGTTGCTGGTGGGCCGAGTGCTGGACCGAGTCTGCTTCCTAGCCATGCTCTCCCTCTTCATCTGTGGCACTGCTGGCATCTTCCTCATGGCCCACTACAACCAAGTGCCTGACCTGCCGTTCCCCGGAGACCCCCGCCCCTACCTGCCTTTGCCAGACTGAGCCAACCAATCCCTCCTGGGCCCTGGAGTCAGCTATGAGGGCCATGCTGTTTGTAGAGCTGTATCCCGTGTTGATGCTGAGTGTGCTCTTGGGGAAATACCCAAGGCTTCCTGGGAGAAGATAGAGAAATAAAGAGACAGAGGGGGATTTCTGCAGTGGTTGGTGATGGGTATGGTCACATGACTTTGAGCAGTTCTGATAGGTCACTTTGAAGCCCTAAGAGCTCTGCCTTTCCTGATGTCATTGACTGGGCAAGGTTTTACCCTTTGAGGCCTGAGAAAATTTCCTCCTGCCATTTTGTAAGATTTATTTCTATTATTTCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'17-18,'17-16,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.070
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(29.1=100)
A:
PF0293211=Neur_chan_memb=FE(17.8=100)
C2:
PF0293211=Neur_chan_memb=PD(12.6=53.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGTTACGGATGCATGT
R:
TAGGAAGCAGACTCGGTCCAG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types