GgaEX6046376 @ galGal3
Exon Skipping
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16713694-16714344:+
Coord C1 exon
chr9:16713694-16713898
Coord A exon
chr9:16713969-16714102
Coord C2 exon
chr9:16714177-16714344
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGTGATGCTGGGTCGTGCAGGAC
3' ss Score
3.07
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTGTGGCTGCACCTCCTGCCCCGCTATCTGGGCATGCACATGCCAGAGGAGGCCCCGGGGCCACCGCAAGCCACCCGGCGACGTAGTTCCCTGGGGCTGATGGTGAAAGCTGATGAGTACATGCTATGGAAAGCCCGGACCGAGCTTCTCTTTGAGAAGCAGAAGGAGAGGGATGGACTGATGAAAACCGTGCTGGAGAAGATTG
Seq A exon
GACGTGGCCTGGAAAGCAACTGTGCACAGGACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCAGC
Seq C2 exon
GAGAACGAGGAGTGGATCCTGGTGGGGAGAGTGATCGACCGCGTCTGCTTCTTCATCATGGCCTCGCTCTTCGTGTGCGGTACCATTGGAATCTTCCTCATGGCTCACTTCAACCAGGCGCCCGCCCTGCCCTTCCCTGGGGACCCCAAGACGTACCTGCCCCCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(28.0=100)
A:
PF0293211=Neur_chan_memb=FE(18.1=100)
C2:
PF0293211=Neur_chan_memb=PD(12.8=55.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTATCTGGGCATGCACATG
R:
ATGATGAAGAAGCAGACGCGG
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]