BtaEX6012393 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010378 | PEF1
Description
Bos taurus penta-EF-hand domain containing 1 (PEF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001097992]
Coordinates
chr2:122620933-122635415:+
Coord C1 exon
chr2:122620933-122620968
Coord A exon
chr2:122630771-122631080
Coord C2 exon
chr2:122635260-122635415
Length
310 bp
Sequences
Splice sites
3' ss Seq
GATGTCTTCTCTTCTTGCAGGGC
3' ss Score
11.38
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTCAGAATCGCCATGGCCAGCTATCCTTACGGGCAG
Seq A exon
GGCTGCCCAGGAGCTGGGGGACAAGCACCCGGAGCCCCTCCGGGTAGCTACTACCCCGGACCCCCCCACGGTGGAGGGCAGTATGGGAGCGGGGTACCCCCTGGTGGCGGATATGGAGGAGGTCCTGCCCCTGGAGGGCCTTACGGACCACCAGCTGGTGGAGGACCCTATGGACACCCCCACCCTGGGGGGCTCCCTTCTGGAACTCCAGGAGGACCCTATGGTGGCGCAGCCCCAGGGGGCCCCTATGGTACACCACCTCCAAATTCCTTCGGTGCCGGACCTTATGGACAGGGACCACCTCCTCCAG
Seq C2 exon
GTGGCGTCCCTCCCAATGTGGATCCCGAGGCTTACTCCTGGTTCCAGTCAGTGGACTCTGATCACAGTGGCTACATCTCCATCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCGTTCAATGACGAGACGTGCCTTATGATGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010378-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=1.000 C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134991=EF-hand_7=PU(70.1=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAATCGCCATGGCCAG
R:
ATCATCATAAGGCACGTCTCGT
Band lengths:
190-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]