BtaEX6013764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6641212-6645921:-
Coord C1 exon
chr3:6645727-6645921
Coord A exon
chr3:6642003-6642107
Coord C2 exon
chr3:6641212-6641268
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACCCCTCTCTGTGCCCCCAGGGT
3' ss Score
12.37
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTCAGGAACTAGAATCTCTCCTGTGTCACAGTGAGAGTCCATCTCAGCTCATTTGGACATCATCTCGCAATGCAAAGAAATCTAATTTCAGCTTTGAGGATGTCCAGCACAGCAAAGGCCAGGAGCCCTACAGCTCTTCCAAATACGCGATTGACCTTCTGAGTGTGGCTTTGAACAGACACTTCAACCATCAG
Seq A exon
GGTCTGTATTCCAGTGTAGTGTGCCCAGGTACGATGCTGACCAATTTGACATATGGAATTCTACCTCCCTTTGTGTGGATGTTAATCATGCCAATCATATGGCTG
Seq C2 exon
TTACGCTTTTTTGCAAACGCTTTCACGTTGACACCTCACAATGGAACAGAAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976-'5-9,'5-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(54.9=95.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000007841fB3311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGAATCTCTCCTGTGTCACAGT
R:
AGTGCTTCTGTTCCATTGTGAGG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]