GgaEX0003400 @ galGal3
Exon Skipping
Gene
ENSGALG00000002681 | HSD17B7
Description
NA
Coordinates
chr8:3826189-3828241:-
Coord C1 exon
chr8:3828047-3828241
Coord A exon
chr8:3827503-3827607
Coord C2 exon
chr8:3826189-3826245
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTTGGTTTCTTCTCTGCAGGGT
3' ss Score
10.7
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATTCGTCAGCTCGAGTCTCTGCTCTGTGGCAACGAAAAGCCGTCACGACTCATCTGGACCTCTTCCAGCAATGCAAGGGAATCTGCCTTCAGCCTGTCTGACTATCAGCATGCCAAGGGGCAGGAATCATACAGTTCCTCCAAATACGCCACTGACCTGACAAGTGTGGTTCTGAACAGGAAATTTAATAAGCAG
Seq A exon
GGTCTGTATTCCAGTGTTGTTTGTCCTGGCCTCGTTATGTCCAACATGACCTTCAAAATCCTGCCCGTTTTTCTGTGGGTGCTGCTGATGCCCATCATGTTTTTG
Seq C2 exon
ATCCGTTTCTTTGCCAAGACTTACACTCTGACACCGTATAATGGAGCAGAAGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002681_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(51.4=83.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCGAGTCTCTGCTCTG
R:
GCTTCTGCTCCATTATACGGTGT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]