MmuEX6029049 @ mm10
Exon Skipping
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:169959423-169961199:-
Coord C1 exon
chr1:169961005-169961199
Coord A exon
chr1:169959687-169959791
Coord C2 exon
chr1:169959423-169959479
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCTCTGTGCTCCCAGGGT
3' ss Score
9.4
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATTCGGGAACTGGAACCACTTCTCTGCCATGCGGACAACCCCTCTCAGCTCATCTGGACGTCCTCTCGCAATGCAAAGAAGGCTAACTTCAGCCTGGAGGACATCCAGCACTCCAAAGGCCCGGAACCCTACAGCTCTTCCAAATATGCTACCGACCTCCTGAATGTGGCTTTGAACAGGAATTTCAACCAGAAG
Seq A exon
GGTCTGTATTCCAGTGTGATGTGCCCAGGCGTCGTGATGACCAATATGACGTATGGAATTTTGCCTCCCTTTATCTGGACGTTGCTCCTACCCATAATGTGGCTC
Seq C2 exon
CTTCGCTTTTTTGTAAATGCGCTCACTGTGACACCGTACAACGGAGCAGAGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675-'9-8,'9-7,12-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGAACTGGAACCACTTCT
R:
GCCTCTGCTCCGTTGTACG
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types