BtaEX6014598 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15434963-15436418:+
Coord C1 exon
chr3:15434963-15435064
Coord A exon
chr3:15435559-15435676
Coord C2 exon
chr3:15435971-15436418
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCTCCTCCTTACAGTGG
3' ss Score
10.1
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATTTTCTTCGTCCAGGATGTTCTGTTTGTCCTCCAGGCCATTGGCATCCCAGGTTGGGGGTTCAG
Seq A exon
TGGCTGGATCTCTGCCCTGGTGGTGCTGAAGGTCAACACAGCTGTAGCTGTACTCATGCTGCTGGTTGCCCTGTTCTTCACTGGCATTGCTGTGCTGGGAATTGTTATGCTGAAGCGG
Seq C2 exon
ATCCACTCTTTGTATCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAGTTTGCAGCTGGTGTCTTCTCCAACCCTGCGGTGCGAACCGCAGCTGCCAATGCAGCCGCTGGGGCTGCAGAAAATGCCTTCCGGGCCCCGTGACCCCTAACTGGGATGCCCTGGCCCTTCCACTGAGGGAGGCGACTAGCCCCCATCCCTGAGGTCTCTGGGACTTTGAGACATCACTGTTTGATGTCTCCACTATAGTACCCCCAATCATACAACCATGACTGCTGAACCTGACTTAAGGGTGTGGGGAGCCCACCGTGACCCAGTCACTGCTTCCCTCCCACCCCTTGATCAGGCCACACTGCTGCCACAACTACACACCCGACCCGCTTCCCTCTGCTGTGCCAAGGCTGTTGCTTCGGTTATTTAAATAAAAAGAAAATGGAACTGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=16.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGTCCTCCAGGCCATTG
R:
CAGAGACCTCAGGGATGGGG
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]