MmuEX0041137 @ mm10
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89181175-89182765:+
Coord C1 exon
chr3:89181175-89181276
Coord A exon
chr3:89181926-89182043
Coord C2 exon
chr3:89182299-89182765
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACCCGTGCATCTTCCCACAGCGG
3' ss Score
9.95
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GAGTGATAGTTCATTCAATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGCATCCCAGGGTGGGGCTTCAG
Seq A exon
CGGCTGGGTGACTGCTCTGGTGGTGGTGGGATCCAAACCTGCCGTGGCGGTGCTCATGCTGCTCGTCGCCCTGCTCTTCACCGGCATCGCAGTGCTGGGAATCGTGATGCTGAAGCGG
Seq C2 exon
ATCCACTCCCTGTACCGCCAAACGGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGGTTCGAACTGCTGCTGCCAATGCAGCTGCCGGAGCTGCTGAAAATGCCTTCAGGGCCCCTTGACCCCTGCTGCACCCGCTGGGATGCCCTGGGCCTGTCACCTGTGGGAACCAAGATAGTCCCTATCCCTGAAGTCTCTGGGATTCAGGGAGCCATCACCACTTGGTGACTTCTATGGGGCTCTTCATTCCACAGCCATGACTTTAATCCTGACTTGAGGTGTGGAGAGCCCGCTGTGACTCAGTCATTATTTGCCTTTTATCTCCCATCTGGCCACACTGCTGCCGCCACCTCTCACACAACCCCAACCCCAGTTTCCTTCTGCTGTGCCAAGGATGTCTTCTTCCGTTATTTAAATTAAAGAAAAAAAAGTGTAACTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=PD(1.0=2.5),PF041448=SCAMP=FE(78.0=100)
C2:
PF041448=SCAMP=PD(16.0=16.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTTGTCCTCCAGGCC
R:
CTTGGTTCCCACAGGTGACAG
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types