MmuEX6072101 @ mm10
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89180729-89182043:+
Coord C1 exon
chr3:89180729-89180888
Coord A exon
chr3:89181175-89181276
Coord C2 exon
chr3:89181926-89182043
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTTTCTCTTTGCAGGAG
3' ss Score
12.23
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGCTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
Seq A exon
GAGTGATAGTTCATTCAATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGCATCCCAGGGTGGGGCTTCAG
Seq C2 exon
CGGCTGGGTGACTGCTCTGGTGGTGGTGGGATCCAAACCTGCCGTGGCGGTGCTCATGCTGCTCGTCGCCCTGCTCTTCACCGGCATCGCAGTGCTGGGAATCGTGATGCTGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(54.6=100),PF041448=SCAMP=PU(2.0=1.9)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=PD(1.0=2.5),PF041448=SCAMP=FE(78.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGAACTTCTTCGCCTGC
R:
TTCAGCATCACGATTCCCAGC
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types