RnoEX6010267 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188493020-188494411:+
Coord C1 exon
chr2:188493020-188493179
Coord A exon
chr2:188493793-188493894
Coord C2 exon
chr2:188494294-188494411
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTTTCTCTTTGCAGGAG
3' ss Score
12.23
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGGTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTTACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
Seq A exon
GAGTGATAGTTCATTCAATTTCTTCGTTTTTTTCTTCATTTTCTTCGTCCAGGATGTGTTCTTTGTCCTCCAGGCCATTGGTATCCCAGGTTGGGGCTTCAG
Seq C2 exon
TGGCTGGGTGTCCGCTCTCGTGGTGGTGGGGTCCAACCCAGCCGTGGCGGTGCTCATGCTGCTCGTCGCCCTGCTCTTCACTGGCATTGCCGTGCTGGGAATTGTGATGCTGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'30-47,'30-45,31-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGAACTTCTTCGCCTGC
R:
AGCATCACAATTCCCAGCACG
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]