HsaEX0056359 @ hg38
Exon Skipping
Gene
ENSG00000116521 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr1:155256674-155257657:-
Coord C1 exon
chr1:155257498-155257657
Coord A exon
chr1:155257285-155257386
Coord C2 exon
chr1:155256674-155256791
Length
102 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTCCTCTTTGTAGGAG
3' ss Score
10.5
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCAGCACGCTGGCTCTTCTCCTGAACTTCCTCGCCTGCCTGGCCAGCTTCTGTGTGGAAACCAACAATGGCGCAGGCTTTGGGCTTTCTATCCTCTGGGTCCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCCATGTATAAGGCTTTCCG
Seq A exon
GAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATTTTCTTCGTCCAGGATGTGCTCTTTGTCCTCCAGGCCATTGGTATCCCAGGTTGGGGATTCAG
Seq C2 exon
TGGCTGGATCTCTGCTCTGGTGGTGCCGAAGGGCAACACAGCAGTATCCGTGCTCATGCTGCTGGTCGCCCTGCTCTTCACTGGCATTGCTGTGCTAGGAATTGTCATGCTGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116521-'13-17,'13-15,17-17
Average complexity
ME(15_17-16_14[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTCTTCTCCTGAACTT
R:
AGCAATGCCAGTGAAGAGCAG
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development