DreEX6072085 @ danRer10
Exon Skipping
Gene
ENSDARG00000016765 | scamp3
Description
secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
Coordinates
chr19:9077820-9078984:+
Coord C1 exon
chr19:9077820-9077979
Coord A exon
chr19:9078650-9078751
Coord C2 exon
chr19:9078867-9078984
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTGTTTCTCAACAGGAG
3' ss Score
12.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCACAGCATGCACTCTGCTCATTAACCTCATCTCCTGTTTGGCTGTCTTCTGTGTGGATCCCAATAATGGAGTGGGCTTTGGTCTTGCCATTCTCTGGTTTCTCCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTACAAAGCCTTCAG
Seq A exon
GAGTGACAGTTCCTTCAACTTCTTTGCATTTTTCTTTGTGTTCTTCGCCCAGTTGGTGCTTTATGTTATGATGACTATTGGGATCCCAGGTTGGGGTTTCAG
Seq C2 exon
TGGATGGATCGTGAGTTTAGCCGCTCTCAGCACGAGTAAGGCCGTGGGTGCCATCATGATGATGAACGCTGTGCTCTTCACTGCACAGTTGGCTATGGGAATAGTGCTGCTCAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016765-'6-8,'6-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCATGCACTCTGCTCAT
R:
CCAACTGTGCAGTGAAGAGCA
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]