BtaEX6014599 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15434694-15435676:+
Coord C1 exon
chr3:15434694-15434853
Coord A exon
chr3:15434963-15435064
Coord C2 exon
chr3:15435559-15435676
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTTTCTCTTTGCAGGAG
3' ss Score
12.13
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTAGCACTCTGGCTCTTCTTTTGAATTTTCTTGCCTGCCTGGCCAGCTTCTGTGTGGAGACCAGCAATGGCTCAGGCTTTGGGCTCTCTATCCTCTGGATCCTCCTCTTCACTCCCTGCTCCTTCGTCTGCTGGTATCGCCCCATGTACAAGGCTTTCCG
Seq A exon
GAGTGACAGTTCATTCAATTTCTTCGTTTTCTTCTTCATTTTCTTCGTCCAGGATGTTCTGTTTGTCCTCCAGGCCATTGGCATCCCAGGTTGGGGGTTCAG
Seq C2 exon
TGGCTGGATCTCTGCCCTGGTGGTGCTGAAGGTCAACACAGCTGTAGCTGTACTCATGCTGCTGGTTGCCCTGTTCTTCACTGGCATTGCTGTGCTGGGAATTGTTATGCTGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094-'7-11,'7-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTTCTTGCCTGCCTGG
R:
CAATTCCCAGCACAGCAATGC
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]