MmuEX0041136 @ mm10
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89180252-89182765:+
Coord C1 exon
chr3:89180252-89180380
Coord A exon
chr3:89180729-89180888
Coord C2 exon
chr3:89182299-89182765
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTCTCTGCCCCTCAGGCA
3' ss Score
9.76
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CTCGACAGAACAACTGGCCTCCCCTACCGTCTTTTTGCCCTGTAAAGCCTTGCTTTTTCCAAGACATCTCTATGGAGATACCCCAAGAATTTCAGAAGACGGTGTCCACCATGTACTACCTCTGGATGT
Seq A exon
GCAGCACTCTGGCTCTTCTCCTGAACTTCTTCGCCTGCCTGGCCAGGTTCTGTGTGGACACCGGCAGTGGCTCAGGCTTTGGGCTGTCTATGCTCTGGCTGCTCCTTTTCACTCCCTGCTCCTTTGTCTGCTGGTACCGCCCGATGTATAAGGCTTTCCG
Seq C2 exon
ATCCACTCCCTGTACCGCCAAACGGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGGTTCGAACTGCTGCTGCCAATGCAGCTGCCGGAGCTGCTGAAAATGCCTTCAGGGCCCCTTGACCCCTGCTGCACCCGCTGGGATGCCCTGGGCCTGTCACCTGTGGGAACCAAGATAGTCCCTATCCCTGAAGTCTCTGGGATTCAGGGAGCCATCACCACTTGGTGACTTCTATGGGGCTCTTCATTCCACAGCCATGACTTTAATCCTGACTTGAGGTGTGGAGAGCCCGCTGTGACTCAGTCATTATTTGCCTTTTATCTCCCATCTGGCCACACTGCTGCCGCCACCTCTCACACAACCCCAACCCCAGTTTCCTTCTGCTGTGCCAAGGATGTCTTCTTCCGTTATTTAAATTAAAGAAAAAAAAGTGTAACTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF049918=LicD=PD(35.5=88.6),PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(54.6=100),PF041448=SCAMP=PU(2.0=1.9)
C2:
PF041448=SCAMP=PD(16.0=16.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCTACCGTCTTTTTGCC
R:
AAGGCATTTTCAGCAGCTCCG
Band lengths:
245-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types